I wonder if there is a way in uTune to do what I thought of as Transpose,ie shift everything equally by 50 cents or whatever? Or is this only done by offsetting the output from uTune rather than within it?
Currently there is no such function, you can use the pitch knob on your VCO for that.
as it will be explained eventually once the Notations chapter arrives?
As mentioned above, I updated the manual and added the chapter about notations.